Complete mitochondrial genome of Lepidocephalichthys berdmorei and its phylogenetic status within the family Cobitidae (Cypriniformes)
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Complete mitochondrial genome of Lepidocephalichthys berdmorei and its phylogenetic status within the family Cobitidae (Cypriniformes)
- Publication date
- 2024-12-10
- Topics
- Gene arrangement pattern, Lepidocephalichthys berdmorei, mitochondrial genome, phylogenetic analysis
- Publisher
- Pensoft Publishers
- Collection
- biodiversity
- Contributor
- Pensoft Publishers
- Language
- English
- Rights-holder
- Copyright held by individual article author(s).
- Volume
- 1221
- Item Size
- 24.0M
- Abstract
- In this study, the complete mitochondrial genome of Lepidocephalichthys berdmorei was first determined by the primer walking sequence method. The complete mitochondrial genome was 16,574 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and a control region (D-loop). The gene arrangement pattern was identical to that of other teleosts. The overall base composition was 29.9% A, 28.5% T, 25.5% C, and 16.1% G, with an A+T bias of 58.4%. Furthermore, phylogenetic analyses were conducted based on 13 PCGs from the mitochondrial genomes of 18 cobitid species using with three different methods (Neighbor-joining, Maximum likelihood, and Bayesian inference). All methods consistently showed that the four species of the genus Lepidocephalichthys form a monophyletic group. This study would provide effective molecular information for the Lepidocephalichthys species as well as novel genetic marker for the study of species identification.
- Addeddate
- 2025-03-26 18:48:00
- Bhl_virtual_titleid
- 210914
- Bhl_virtual_volume
- v.1221 (2024)
- Call number
- 10_3897_zookeys_1221_129136
- Call-number
- 10_3897_zookeys_1221_129136
- Foldoutcount
- 0
- Genre
- article
- Identifier
- completemitocho1221zhou
- Identifier-ark
- ark:/13960/s29kd4cv8wf
- Identifier-bib
- 10_3897_zookeys_1221_129136
- Identifier-doi
- 10.3897/zookeys.1221.129136
- Ocr
- tesseract 5.3.0-6-g76ae
- Ocr_detected_lang
- en
- Ocr_detected_lang_conf
- 1.0000
- Ocr_detected_script
- Latin
- Ocr_detected_script_conf
- 1.0000
- Ocr_module_version
- 0.0.21
- Ocr_parameters
- -l eng
- Page_number_confidence
- 72
- Page_number_module_version
- 1.0.5
- Page_range
- 51-69
- Pages
- 19
- Pdf_degraded
- invalid-jp2-headers
- Pdf_module_version
- 0.0.25
- Possible copyright status
- In copyright. Digitized with the permission of the rights holder.
- Ppi
- 300
- Source
- ZooKeys 1221
- Year
- 2024
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